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NEET Notes Hub MOLECULAR ORBITAL THEORY LAB
Chemistry · Chemical Bonding · NEET / JEE

Watch orbitals interfere, not just diagrams describe them.

Molecular Orbital Theory in one interactive lab: combine atomic orbitals in real 3D, flip their phase to flip bonding into antibonding, watch the wavefunctions add and cancel, then build full MO energy diagrams for every second-period diatomic — with bond order and magnetism computed live.

σ / σ*π / π* phase matchingnodal planes bond orderparamagnetism

What Molecular Orbital Theory actually claims

The core idea behind every animation in this lab

Valence Bond Theory treats a bond as two atoms sharing a patch of overlapping electron cloud while keeping their own orbital identities. MOT rejects that picture entirely. The moment two atoms approach, their atomic orbitals (AOs) stop existing as separate entities — they combine, mathematically and physically, into brand-new orbitals called molecular orbitals (MOs) that belong to the whole molecule, not to either nucleus alone.

This combination is called the Linear Combination of Atomic Orbitals (LCAO): ψMO = c₁ψA ± c₂ψB. The + combination is in-phase addition — the two wavefunctions reinforce between the nuclei, electron density piles up there, and the resulting orbital sits lower in energy than either parent AO. That is a bonding MO. The combination is out-of-phase — the waves cancel between the nuclei, a node (zero probability plane) appears right where the bond should be, and the orbital sits higher in energy. That is an antibonding MO, marked with a star (σ*, π*).

1

Same energy

Only AOs of comparable energy combine effectively — 1s only really combines with 1s, 2s with 2s, and so on.

2

Same symmetry about the bond axis

The orbitals must have matching symmetry — a 2pz pointed along the bond axis combines head-on; a 2px lying sideways cannot combine with it.

3

Maximum overlap

The greater the overlap between the two AOs, the lower the bonding MO drops and the stronger the resulting bond.

4

Phase, not distance, decides bond vs antibond

Whether the result is bonding or antibonding is decided purely by the relative sign (phase) of the two wavefunctions where they meet — this is the single idea the whole lab is built to make visible.

Exam tip: "node between the nuclei" and "energy raised above the parent AOs" are the two hallmark features examiners use to identify an antibonding orbital in a diagram or statement-based question.

Four overlap geometries, four orbital types

Every diatomic bond you'll ever draw is built from one of these four combinations
Combining AOsOrientationResultant (bonding)Resultant (antibonding)Nodal planes containing the axis
1s + 1s, 2s + 2sHead-on, sphericalσ (sigma)σ*0
2pz + 2pzHead-on, along bond axisσ2pσ*2p0
2px + 2px (or 2py+2py)Sideways, parallel lobesπ2pπ*2p1

σ orbitals are symmetric about the bond axis — rotate them around the axis and nothing changes. π orbitals are not: they always carry one nodal plane that contains the internuclear axis itself, which is exactly why every diatomic molecule has at most one σ bond but can have up to two π bonds (from the two perpendicular p-orbital pairs).

Orbital Combination Lab

Drag to rotate · scroll to zoom · pick a combination, flip the phase, slide the overlap
σ · bonding
drag / scroll
+ phase lobe − phase lobe nodal plane (ψ = 0)
separated atoms0%fully combined MO
RESULTANT MOLECULAR ORBITAL
σ (bonding)

Two 1s orbitals approach in-phase. Amplitude reinforces between the nuclei — electron density builds up right where it can attract both nuclei at once.

energy ↓ below parent AOs nodes between nuclei: 0

Reading the shapes

σ bonding: one continuous, cigar-shaped cloud wrapped around both nuclei along the bond axis. No node between them — this is the strongest possible bond for a given pair of AOs because the overlap is head-on and maximal.

σ* antibonding: the cloud is pinched to zero exactly at the midpoint. Electron density is thrown to the outside of each atom instead of the region between them, so instead of holding the nuclei together it lets them fly apart.

π bonding: two lobes — one above, one below the bond axis — each spanning both nuclei as one continuous piece. The plane containing the two nuclei is always a node; that's the defining feature of every π orbital, bonding or not.

π* antibonding: the merge breaks — each atom keeps its own separate lobes now, with a second node opening up between the nuclei in addition to the permanent one along the axis. Two nodal planes total.

Phase matching, in the wave language

The same overlap you just built in 3D, read as amplitude vs. position
closefar
WHAT YOU'RE SEEING
Constructive interference

Top: the two atomic wavefunctions ψA and ψB. Middle: their sum, ψMO. Bottom: electron probability density |ψMO|² — this is the curve that becomes the 3D orbital cloud.

The bottom curve is the one that matters physically. Probability density is the square of the wavefunction, so a negative lobe of ψ still contributes positive density — but the interference pattern in ψ itself is what decides whether density piles up or empties out at the midpoint.

MO Energy Level Diagram Builder

Pick a homonuclear diatomic — electrons fill by Aufbau + Hund's rule automatically
ELECTRONIC CONFIGURATION
BOND ORDER = ½ (Nb − Na)

MAGNETIC NATURE

Energy ordering — and why it flips after N₂

For Li₂, Be₂, B₂, C₂, N₂ (low nuclear charge, noticeable 2s–2p mixing):

σ1s < σ*1s < σ2s < σ*2s < π2px=π2py < σ2pz < π*2px=π*2py < σ*2pz

For O₂, F₂, Ne₂ (higher nuclear charge, 2s–2p mixing negligible):

σ1s < σ*1s < σ2s < σ*2s < σ2pz < π2px=π2py < π*2px=π*2py < σ*2pz

This single swap is why B₂ and O₂ both turn out paramagnetic by two completely different routes — B₂ because its last 2 electrons enter the degenerate π2p pair before any σ2p exists to fill, and O₂ because its last 2 electrons are forced into the degenerate π*2p pair. Get the ordering right and both predictions fall out automatically.

Quick reference table — all second-period homonuclear diatomics

SpeciesElectronsBond orderExists?Magnetic nature
H₂21YesDiamagnetic
He₂40No
Li₂61YesDiamagnetic
Be₂80No (MOT prediction)
B₂101YesParamagnetic
C₂122YesDiamagnetic
N₂143YesDiamagnetic
O₂162YesParamagnetic
F₂181YesDiamagnetic
Ne₂200No

Bond order 0 means bonding and antibonding electrons cancel exactly — the "molecule" has no net attraction and does not form. Higher bond order → shorter, stronger bond and higher bond dissociation energy.

Definitions worth memorising verbatim

TermMeaning
Bonding MOLower energy than parent AOs; formed by in-phase (constructive) combination; increases electron density between nuclei.
Antibonding MO (*)Higher energy than parent AOs; formed by out-of-phase (destructive) combination; has a node between the nuclei.
Nonbonding MOEnergy essentially unchanged from the AO; occurs when symmetry mismatch prevents effective overlap.
Bond order½ (electrons in bonding MOs − electrons in antibonding MOs). Predicts bond existence, strength, and length.
ParamagneticContains one or more unpaired electrons in the MO configuration; weakly attracted into a magnetic field.
DiamagneticAll electrons paired; weakly repelled by a magnetic field.